PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT22250

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 304aa MW: 32353.7 Da PI: 7.233

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT22250	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.3	0.00025	106	128	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+ksF + L H +H OIT22250 106 YKCSVCNKSFASYQALGGHKASH 128 9***********99998888877 PP
2	zf-C2H2	12	0.00065	157	179	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F++ L H r+H OIT22250 157 HECSICHKYFPTGQALGGHKRRH 179 78*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence
MAIEALKSPT TEPTPTTPPI YEQVNLDSST KGKRSKRPRN EIQPTEEEFL ALCLIMLARS 60 GGGRTNSTHH DTTTTAAAAV QQQKKQITYD PLPRQDQEAL IEQHSYKCSV CNKSFASYQA 120 LGGHKASHRN KHSTTTAATV SDDNSTSTSL NPSARSHECS ICHKYFPTGQ ALGGHKRRHY 180 EGKIIGGGGG SREAGGSHTV ISSEAGGSHT VISAEAGGSH TLISSEAGGS HTLISSEAGG 240 SHTLISWEAG GSARTVRDFD LNLPPPPEFS LGLTVDCEGK SQLSSEQEVE SPMPTKKPRL 300 FFSD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27730.1	5e-37	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT22250