PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT22376
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 127aa    MW: 14284.3 Da    PI: 9.2934
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT22376genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF511.8e-161159148
              S---SHHHHHHHHHHHHHHHHHHHHHH.HHHHT-EEEEEEE-TTSEEEE CS
    SRF-TF  1 krienksnrqvtfskRrngilKKAeEL.SvLCdaevaviifsstgklye 48
              k+i  +s r vtfskRr+g++KKA EL S   +++vav++fs+tgk y+
  OIT22376 11 KKITKESSRMVTFSKRRKGLFKKAVELeSKTSGVQVAVLVFSPTGKPYT 59
              678999*********************89999*************9886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    
MGTGKKKIEI KKITKESSRM VTFSKRRKGL FKKAVELESK TSGVQVAVLV FSPTGKPYTC  60
GGNDVLTTFQ NHCDSSHSSE SATNGMWDSK FNVETCHDVN ELLMFKAHLE STREKLAESQ  120
FFESLWL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47760.15e-13M-type_MADS family protein