PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT22401

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 191aa MW: 21317 Da PI: 8.8052

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT22401	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	146.1	9.9e-46	14	113	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasnv+kll++l++++reda++sl+yeA++r+rdPvyG+vgvi+ lq+ql+ql+ +l+ +k+e OIT22401 14 PCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKIFGASNVTKLLNELQPHQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQLDLSCAKSE 113 7*********************************************************************************************999887 PP

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence
MASSSSSTLS SYSPCAACKF LRRKCQPECV FAPYFPPDQP QKFANVHKIF GASNVTKLLN 60 ELQPHQREDA VNSLAYEADM RLRDPVYGCV GVISLLQHQL RQLQLDLSCA KSELSKYQNI 120 GGGIASTNSY SLLAAGNQHN LGFNFMGGGG GGRPDLNHHL YHHQFFPRDQ QQQQQQQIIR 180 RFERGSNNFG V

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65620.3	7e-68	LBD family protein

Link Out ? help Back to Top
Ensembl	OIT22401