PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT22451
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 305aa    MW: 34709.7 Da    PI: 4.6564
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT22451genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.91.5e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l++ +   G  +W+++++  g+ R++k+c++rw +yl
         OIT22451 14 KGPWTAEEDKKLINFILNNGQCCWRAVPKLAGLLRCGKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding51.32.7e-1671111547
                      -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++ E++  +d+++qlG++ W++Ia++++ gRt++++k++w+++
         OIT22451  71 SEYEEKMVIDLHAQLGNR-WSKIASHLP-GRTDNEIKNHWNTH 111
                      6779**************.*********.************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    
MGRQPCCDKV GLKKGPWTAE EDKKLINFIL NNGQCCWRAV PKLAGLLRCG KSCRLRWTNY  60
LRPDLKRGLL SEYEEKMVID LHAQLGNRWS KIASHLPGRT DNEIKNHWNT HIKKKLRKMG  120
IDPVTHKPLS TITNDQITNI EQPENLSIQQ ENLQEIMQPS SVNDVSIDQS AITEIKLDDD  180
DDNNNNNKNM GTSCINNNNN FDSTIVQEVN NNGFCTDEVP LIEPHEILVP SKSTPSTSSS  240
SSSSSSSNII EDLKFLPSFD DWPMENNMGF GWENDFSSTL DFLLNDDNDM NNVTYDDSWK  300
FEQLL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16600.13e-94MYB family protein