PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT22574
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NF-YC
Protein Properties Length: 121aa    MW: 13331.4 Da    PI: 6.529
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT22574genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC111.16.1e-352010318100
     NF-YC  18 nhelPlarikkilk.adedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprde 100
                h+lPlarikki+k + +dvkmis eaP+++skacelfi elt r+w+ + + krrt++k d+a+av  tdifdflv+ v +++
  OIT22574  20 PHSLPLARIKKIMKkSSDDVKMISGEAPIIFSKACELFIEELTKRAWIMTMQGKRRTIHKEDVASAVIATDIFDFLVNLVTESD 103
               599**********825689***********************************************************998875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    
MRQAGAYSGI LSGGISKTGP HSLPLARIKK IMKKSSDDVK MISGEAPIIF SKACELFIEE  60
LTKRAWIMTM QGKRRTIHKE DVASAVIATD IFDFLVNLVT ESDVADNKSE VNEDSQVIME  120
T
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54830.38e-35NF-YC family protein