PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT22660

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 921aa MW: 102488 Da PI: 5.6198

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT22660	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.9	1e-28	527	578	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki ++ OIT22660 527 AEKHVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGIPRWPSRKIGKV 578 5899*********************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 921 aa Download sequence
MSSHIDETFN NAMEMMNFEA YAGWCSSPHA IEQMFASYPS FSPINPMSIN YAPFEQLNYE 60 QQFPCEGENW MFQQKNDDQF RDEADYVTDT DNCIIPKSPC QSLPERMLKA LELFKESSGA 120 GILAQVWIPI KNGDDQYILS TCEQPFLLDQ VLSGYREVSR KFTFDVEMKP GSFPGLPGRV 180 FTSRIPEWTS NVQYYREAEY LRVRYAVDNE VRGSIALPVL EDDGHDSQCC AVLELVTTKE 240 KPNFDLEMGH VSRALQAVNL RSTTPTRFTS QSLSKNQRAA LAEIKDVLRA VCHAHRLPLA 300 LTWIPRICTG GCIASSDEKS VLCVENTACY VRDKEMHGFL HACMGHDLED GQGIVGKSLQ 360 SNHPFFYPDV KEYHISEYPL VHHARKFGLN AAVAIRLRSI FTGDDDYVLE FFLPVDIKGS 420 NEQQLLLNNL SRTMQRICKS LRTISDAELV GQGGANCGLQ SESVLDLTPI DLSRKISQHS 480 LLGRTLDLSK ATLDVCDSEI AGMEADGSRE QTRSAPRRQK EKKRSAAEKH VSLSVLQQYF 540 SGSLKDAAKS IGVCPTTLKR ICRQHGIPRW PSRKIGKVNR SLVKIQTVLK SVQGIEGGFK 600 FDPATGGLVA ASSILQDFDS EKCILFPCKD ICVKNPDSLF QDDVSVLQTS CIDNHESVVK 660 MEEDTHVDGN QLAESNSPFS GFCHGCKLAA LDAGWPVCQD KMQCTNSRNV SLGSFCTKEG 720 CRSCRLSTSN LKLDNSGCHF ISRFLHSMPD IDDVETKTRA SNEMDGDDVV MEHNKGSSSG 780 MTDLSNVSGS MMNGSSSSSH SFGERKHTKV KASSEDGASQ ITIKATYKED RIRFKFDPSA 840 GCFQLYEEVA KRFKLQTGAF QLKYLDDEEE WMMMVNEEDL HECLEILDSV GTRSVKFLVQ 900 DVSCAIGSSG SSTSCFLTSG S

Sequence ? help Back to Top

Protein Sequence Length: 921 aa Download sequence

MSSHIDETFN NAMEMMNFEA YAGWCSSPHA IEQMFASYPS FSPINPMSIN YAPFEQLNYE  60
QQFPCEGENW MFQQKNDDQF RDEADYVTDT DNCIIPKSPC QSLPERMLKA LELFKESSGA  120
GILAQVWIPI KNGDDQYILS TCEQPFLLDQ VLSGYREVSR KFTFDVEMKP GSFPGLPGRV  180
FTSRIPEWTS NVQYYREAEY LRVRYAVDNE VRGSIALPVL EDDGHDSQCC AVLELVTTKE  240
KPNFDLEMGH VSRALQAVNL RSTTPTRFTS QSLSKNQRAA LAEIKDVLRA VCHAHRLPLA  300
LTWIPRICTG GCIASSDEKS VLCVENTACY VRDKEMHGFL HACMGHDLED GQGIVGKSLQ  360
SNHPFFYPDV KEYHISEYPL VHHARKFGLN AAVAIRLRSI FTGDDDYVLE FFLPVDIKGS  420
NEQQLLLNNL SRTMQRICKS LRTISDAELV GQGGANCGLQ SESVLDLTPI DLSRKISQHS  480
LLGRTLDLSK ATLDVCDSEI AGMEADGSRE QTRSAPRRQK EKKRSAAEKH VSLSVLQQYF  540
SGSLKDAAKS IGVCPTTLKR ICRQHGIPRW PSRKIGKVNR SLVKIQTVLK SVQGIEGGFK  600
FDPATGGLVA ASSILQDFDS EKCILFPCKD ICVKNPDSLF QDDVSVLQTS CIDNHESVVK  660
MEEDTHVDGN QLAESNSPFS GFCHGCKLAA LDAGWPVCQD KMQCTNSRNV SLGSFCTKEG  720
CRSCRLSTSN LKLDNSGCHF ISRFLHSMPD IDDVETKTRA SNEMDGDDVV MEHNKGSSSG  780
MTDLSNVSGS MMNGSSSSSH SFGERKHTKV KASSEDGASQ ITIKATYKED RIRFKFDPSA  840
GCFQLYEEVA KRFKLQTGAF QLKYLDDEEE WMMMVNEEDL HECLEILDSV GTRSVKFLVQ  900
DVSCAIGSSG SSTSCFLTSG S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Ensembl	OIT22660