PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT22841

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 245aa MW: 26244.2 Da PI: 7.5297

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT22841	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11	0.0013	93	115	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ Cgk F + L H +H OIT22841 93 YKCSVCGKGFGSYQALGGHKASH 115 9*********9999998888777 PP

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence
MALEALNSPT TTTPPTFQFE NNGQLRYLEN WTKGKRSKRP RSMDQQATEE EYLALCLIML 60 ARSDGSSNQE QSLPPPPAPV MKIHALPEEK MVYKCSVCGK GFGSYQALGG HKASHRKLVA 120 GGGGGDDQST TSTTTNATGT TSSVNGTGKT HECSICHKCF PTGQALGGHK RCHYDGGNSN 180 GSVSVGVTSS EGVGSTVSHR DFDLNIPALP EFWPGFGSGE DEVESPHPAK KSRLSLPPKF 240 ELFRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27730.1	1e-54	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT22841