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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | OIT22871 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family | GRAS | ||||||||
| Protein Properties | Length: 441aa MW: 50619.6 Da PI: 6.1136 | ||||||||
| Description | GRAS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GRAS | 325.9 | 7.7e-100 | 57 | 430 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIl 103
+lL ecA+a+s++d +++++lL+ l+elasp+gd +q+la+yf++AL + ++++ ++yk+l++ ++++k+ +++ + f+evsP+ +f+h++ N aIl
OIT22871 57 RLLRECATAISEKDSTKIHHLLWMLNELASPYGDCNQKLAFYFLQALFCKATDTGLRCYKTLTSAAEKSKSFDSSRKLILKFQEVSPWTTFGHVASNGAIL 157
7899**********************************************************9999987666666566666******************** PP
GRAS 104 eavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl.vakrledleleeLrvkpgEala 203
ea++ge+r+HiiD++ + ++QWp+Ll+aLa+R++++p+l++T+v+ +++ k ++e+++r++kfA+ +gvpfefnv+ +++l++l+ e+L++k++Ea+a
OIT22871 158 EALDGESRLHIIDISHTFCTQWPTLLEALATRNDETPHLKLTVVVTESTLVKSVMKEVAQRMEKFARLMGVPFEFNVIsGSNHLKKLTKESLNIKEEEAVA 258
**********************************************9999***************************95556******************* PP
GRAS 204 VnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvaceg 302
Vn++ +l ++ +e+ r +v+++++sl+Pk+v++ve+ead ++++F++ f e+l++y+ f++l++++p +s+er ++Ere +++iv+v+ac
OIT22871 259 VNCIGALRKVE-----VEE-RGDVIRMLQSLNPKIVTIVEHEADFssTRNDFVKCFEECLRFYTLYFEMLDESFPITSNERLVIERE-CSKSIVKVLACDD 352
********997.....444.889*******************999545669************************************.89*********85 PP
GRAS 303 ae...rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve.....eesgslvlgWkdrpLvsvSaWr 374
+ e +e+ ++W+erl+e F+p pl+++a++++k+ll+++k ++ ++ +es ++l+W+d+p+v++SaW+
OIT22871 353 QIgegDGETRERGNQWSERLREW-FSPFPLNDDAVDDVKSLLKRYKvGW--SLVlpqenQESPGIYLTWRDEPVVWASAWK 430
532226799999********997.**********************544..444445555688899**************8 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 441 aa Download sequence |
MEKSLFFSKP TNNFLVTNYV HHLINMQNPN QQPHEKLSRS QSPENGDPVS DAKWASRLLR 60 ECATAISEKD STKIHHLLWM LNELASPYGD CNQKLAFYFL QALFCKATDT GLRCYKTLTS 120 AAEKSKSFDS SRKLILKFQE VSPWTTFGHV ASNGAILEAL DGESRLHIID ISHTFCTQWP 180 TLLEALATRN DETPHLKLTV VVTESTLVKS VMKEVAQRME KFARLMGVPF EFNVISGSNH 240 LKKLTKESLN IKEEEAVAVN CIGALRKVEV EERGDVIRML QSLNPKIVTI VEHEADFSST 300 RNDFVKCFEE CLRFYTLYFE MLDESFPITS NERLVIEREC SKSIVKVLAC DDQIGEGDGE 360 TRERGNQWSE RLREWFSPFP LNDDAVDDVK SLLKRYKVGW SLVLPQENQE SPGIYLTWRD 420 EPVVWASAWK PREKSMERHD Q |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G37650.1 | 1e-142 | GRAS family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | OIT22871 |




