PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT22968

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 182aa MW: 20030.7 Da PI: 8.1187

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT22968	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	142.2	1.7e-44	11	109	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrrkC ++C++apyfp e+p+kf nvhk+FGasnv+kll++l +++reda++sl+yeAear+rdPvyG+vg i+ lq+q+e+l++el+++++ OIT22968 11 PCAACKFLRRKCLPGCIFAPYFPPEEPQKFINVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVERLQKELDAANA 109 7*********************************************************************************************99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence
MASSSSSYNS PCAACKFLRR KCLPGCIFAP YFPPEEPQKF INVHKIFGAS NVTKLLNELL 60 PHQREDAVNS LAYEAEARVR DPVYGCVGAI SFLQRQVERL QKELDAANAD LIRYACNEYT 120 PPLPLPGTQA INMAAFRQRP VEFSRGFHQT PSFPIPYSIP NNWNDQNSSA GNIHGGGGGA 180 SI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.2	4e-73	LBD family protein

Link Out ? help Back to Top
Ensembl	OIT22968