PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT23030
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 248aa    MW: 28889.5 Da    PI: 8.9905
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT23030genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.59.5e-30959151
              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
              krienk+nrqvtfskRr g+lKKA+E+SvLCdaev +i+fs++gkl+ey++
  OIT23030  9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYAT 59
              79***********************************************86 PP
2K-box111.49.1e-37841759100
     K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
               ++++   s++ e+akLk+++e Lqr+qRh++GedL+sLs+keLq+LeqqL+++lk+iRs+Kn+l++e+i+elqkk k+lqe+n++L+kk++e
  OIT23030  84 TDHSYPGSWTLEHAKLKARLEVLQRNQRHYMGEDLDSLSMKELQNLEQQLDSALKHIRSRKNQLMHESISELQKKDKALQEQNNQLSKKVKE 175
               55666789*********************************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVGLIVFST KGKLFEYATD  60
SCMERILERY ERYSYAERQL VATTDHSYPG SWTLEHAKLK ARLEVLQRNQ RHYMGEDLDS  120
LSMKELQNLE QQLDSALKHI RSRKNQLMHE SISELQKKDK ALQEQNNQLS KKVKEREKEL  180
AQQNQWEQQN QELNSSSFVL QQQLDSPNLG EAYQSTAEEN GEVERGSNSQ QQTANTVMPP  240
WMIRHLNG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.11e-103MIKC_MADS family protein