PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT23342

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 152aa MW: 16950.6 Da PI: 9.5148

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT23342	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.2	0.00013	45	67	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H OIT23342 45 FSCNYCRRKFYSSQALGGHQNAH 67 89******************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 152 aa Download sequence
MSYEPNTALN LSLSRNELSF DLLFDQSSSS SSSSPLSPAD QPRVFSCNYC RRKFYSSQAL 60 GGHQNAHKLE RTLAKKSREL SSSLRPHSGW STNRNSGSDP TSPSHGHHGH VARFVTTELS 120 YGRRELMSYG SRKNGENVVQ EDFGQLDLSL RL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57520.1	2e-25	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT23342