PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT23877
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 357aa    MW: 38844.6 Da    PI: 5.4932
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT23877genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.64.6e-13117166355
               HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +h  +Er+RR+++N+ ++ Lr+l+P     ++k+ + a+i   +v+YI++Lq
  OIT23877 117 ISHITVERNRRKQMNEHLSVLRSLMPCF---YAKRGDQASIIGGVVDYINELQ 166
               6899***********************9...9********************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    
MEGESLSDHF FEDSEFDIFS ILEALDGGGA SEFNMSNTTT TTTTTTTSDE INGLVSKEEE  60
KKRKLVSQKS TGSSATLQEN SETEADGGAT PNSNKRQRVA TVIGGVEEGN NQMETKISHI  120
TVERNRRKQM NEHLSVLRSL MPCFYAKRGD QASIIGGVVD YINELQQVLQ SLEAKKQRKV  180
YSEVLSPRLV IPSPRVLPSP LSPRKPPLSP KINLPISPRT PQPTSPYKPN NNNNNNNNNR  240
LQQPTISATP LEPSPTSSST NSSIDSVNEL AANSKSAIAD VEVKFSGANV ILKTVSPRIP  300
GQAVKIIAAL EELALEILHV SISTIDGTML NSFTIKIGIE CQLSAEELAH QIQQTFC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53210.19e-82bHLH family protein