PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT23984
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Whirly
Protein Properties Length: 241aa    MW: 26651.5 Da    PI: 10.6556
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT23984genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly201.21.3e-62652031139
    Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePlpd 101
               sv+k+kaal+ ++++ptf++ldsg +kl+r+G ++l++ ++++erkydWek+q falsatev++l+++++++sceffhdp++ +sn+G+vrk+l+ +P +d
  OIT23984  65 SVFKGKAALSAEPRLPTFSKLDSGGVKLNRRGVIMLTFWPSVGERKYDWEKRQLFALSATEVGSLISIGTRDSCEFFHDPSMLSSNAGQVRKSLSFKPNAD 165
               79*************************************************************************************************** PP

    Whirly 102 GsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
               GsG+fv+lsv n+ +k+n++f+vPv+ aefav+r++++
  OIT23984 166 GSGYFVSLSVVNNNLKTNDRFTVPVTTAEFAVMRTAFS 203
               ***********************************995 PP
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    
MAILKLAGLL RPSRNQLLHK RLPGEGVRDS IWQHAINTLA GFSTVRQNIV ADAGKLTGRV  60
FAPYSVFKGK AALSAEPRLP TFSKLDSGGV KLNRRGVIML TFWPSVGERK YDWEKRQLFA  120
LSATEVGSLI SIGTRDSCEF FHDPSMLSSN AGQVRKSLSF KPNADGSGYF VSLSVVNNNL  180
KTNDRFTVPV TTAEFAVMRT AFSFALPHIM GWDRFTNQPS ESVSQSPSKV VPQLTEAEWD  240
R
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.17e-92Whirly family protein