PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT24204

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 510aa MW: 56458.1 Da PI: 5.1189

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT24204	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.2	1.4e-16	27	74	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed +l ++vk++G g+W+++ r g+ R++k+c++rw ++l OIT24204 27 KGPWTATEDAILMEYVKKHGEGNWNAVQRNSGLMRCGKSCRLRWANHL 74 79******************************************9986 PP
2	Myb_DNA-binding	49.8	7.8e-16	80	123	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++++eE+ +++++++++G++ W++ a+ ++ gRt++++k++w++ OIT24204 80 KGAFSPEEERIIIELHAKFGNK-WARMAAQLP-GRTDNEIKNYWNT 123 799*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 510 aa Download sequence
MAPDDRGAKV SPGGGRNGGT SRQALKKGPW TATEDAILME YVKKHGEGNW NAVQRNSGLM 60 RCGKSCRLRW ANHLRPNLKK GAFSPEEERI IIELHAKFGN KWARMAAQLP GRTDNEIKNY 120 WNTRLKRRQR AGLPIYPQEL QQQNQQENNQ HQSLLSSPYD PKRATYSNNN PPSFCLLDIF 180 NPSTMKPSIQ FPLNNNTIFR DPPKGISLTL PSSIRNSQFS SLPTSVPNNN FGHGLSNSMP 240 VPVPVPSFQN NYPSFNNFTT RPFTGNIHSN PNELISGIGG INNINYPSGQ SSIPVTASSS 300 ENTGSDFGSS DANNYANVAG LSRGNSGLLQ DLLEESQTLT TRDVKIEDQN NYLDLKEEEA 360 DYKGKSLWED YGLVEEEGEE AILTEESVYS FAHGVDVTLN SNSESSSPDP NLPSGILNKE 420 VSFQGINQVD DDIMCLLDNF PLAVPVPDWY DERDGKNNSN GQLSNVTNGD HKAENQAEDF 480 NKSQVVANSG PRNHDWELGG CCWNNMPSFC

Sequence ? help Back to Top

Protein Sequence Length: 510 aa Download sequence

MAPDDRGAKV SPGGGRNGGT SRQALKKGPW TATEDAILME YVKKHGEGNW NAVQRNSGLM  60
RCGKSCRLRW ANHLRPNLKK GAFSPEEERI IIELHAKFGN KWARMAAQLP GRTDNEIKNY  120
WNTRLKRRQR AGLPIYPQEL QQQNQQENNQ HQSLLSSPYD PKRATYSNNN PPSFCLLDIF  180
NPSTMKPSIQ FPLNNNTIFR DPPKGISLTL PSSIRNSQFS SLPTSVPNNN FGHGLSNSMP  240
VPVPVPSFQN NYPSFNNFTT RPFTGNIHSN PNELISGIGG INNINYPSGQ SSIPVTASSS  300
ENTGSDFGSS DANNYANVAG LSRGNSGLLQ DLLEESQTLT TRDVKIEDQN NYLDLKEEEA  360
DYKGKSLWED YGLVEEEGEE AILTEESVYS FAHGVDVTLN SNSESSSPDP NLPSGILNKE  420
VSFQGINQVD DDIMCLLDNF PLAVPVPDWY DERDGKNNSN GQLSNVTNGD HKAENQAEDF  480
NKSQVVANSG PRNHDWELGG CCWNNMPSFC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32460.1	1e-71	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT24204