PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT24244
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HB-other
Protein Properties Length: 168aa    MW: 19915.4 Da    PI: 4.8449
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT24244genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.96.2e-17953852
              -HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
  Homeobox  8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52
              ++eq++ Lee+F + ++p  + +e+L+++lgL+++qVk+WF N+R
  OIT24244  9 SDEQIQKLEEVFSQMPTPENDVIEKLSEELGLDTDQVKIWFDNKR 53
              689*****************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    
MDSPIGSSSD EQIQKLEEVF SQMPTPENDV IEKLSEELGL DTDQVKIWFD NKRCYIQAQS  60
DKEERENLRL ENSRLLLENL QMNLELRNHL CATCNPEKHR KILQDLQNEN AILQAELTII  120
SNMHDHLKEN PERYLLLKHH LRHYYNPSGL DLDLKVECDH NFPRLNWN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.17e-10HD-ZIP family protein