PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT24270
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 837aa    MW: 92290.8 Da    PI: 6.2146
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT24270genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.84.4e-191674357
              --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
  Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
              k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ rq+kvWFqNrR +ek+
  OIT24270 16 KYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECpilsHIEPRQIKVWFQNRRCREKQ 74
              5679*****************************************************97 PP
2START180.31.1e-561603682205
               HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXTT CS
     START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelqa 100
               +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++e+l+ + ++  g+++l +++l+a
  OIT24270 160 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCTGMAARACGLVGLDPT-RVAEILKDPPSWYRDCRAVEVLNMLPTAngGTIELLYMQLYA 259
               789*******************************************************.**************************9999************ PP

               XX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHH CS
     START 101 lsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwv 197
               +++l+p Rdf+ +Ry+  + +g++v++++S+ ++q+ p+    +++vRae+lpSg+li+p+++g+s v++v+h+dl++++++++lr+l++s+++ ++kt +
  OIT24270 260 PTTLAPpRDFWLLRYSTVMDDGSLVVCERSLGNTQNGPSmppVPNFVRAEMLPSGYLIRPCEGGGSIVHIVDHMDLEAWSVPEVLRPLYESSAVLAQKTSM 360
               ************************************9999999********************************************************** PP

               HHTXXXXX CS
     START 198 atlqrqce 205
               a+l+++++
  OIT24270 361 AALRQLRQ 368
               ****9876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 837 aa     Download sequence    
MSMSCKDGKS VDDNGKYVRY TPEQVEALER LYHECPKPSS MRRQQLIREC PILSHIEPRQ  60
IKVWFQNRRC REKQRKESSR LQGVNRKLSA MNKLLMEEND RLQKQVSQLV YENGYFRKQT  120
QTTKIASKDT SCESVVTSGQ HHLTPQHPPR DASPAGLLSI AEETLTEFLS KATGTAVEWV  180
QMPGMKPGPD SIGIIAISHG CTGMAARACG LVGLDPTRVA EILKDPPSWY RDCRAVEVLN  240
MLPTANGGTI ELLYMQLYAP TTLAPPRDFW LLRYSTVMDD GSLVVCERSL GNTQNGPSMP  300
PVPNFVRAEM LPSGYLIRPC EGGGSIVHIV DHMDLEAWSV PEVLRPLYES SAVLAQKTSM  360
AALRQLRQIT LEASQPNVTN WGRRPAALRA LSKKLSRGFN EALNGFSSEG WSMLDNDGMD  420
DVTILVNSSP DKFMGLNLSF ADEFTSLSNA VLCAKASMLL QSVTPAVLLR FLREHRSEWV  480
DNDIDAYAAA AVKVGPCSLP GARVCNFGGQ VILPLAHTAE HEELLEVIKL EGVCHSPEDV  540
IMQRDMFLLQ MCSGMDENAV GTCAELIFAP IDASFADDAP LLPSGFRIIP LDSAKEASSP  600
NRTLDLTSAL EIGPAESKVA NDLKSTGVAS KSIMTIAFQF AFESHMQENV ASMARKYVRS  660
FISSVQRVAL ALSPSHFGSL GGLRLPLGTP EAHTLARWIC QSYRHYLGVE LPKLSGEGSE  720
SVLESLWQHS DAIICCSAKA LPVFTFANQA GLDMLETTLV ALQDISLEKI FDEHGRKNLC  780
SEFPQIMQQG FACLRGGICL SSMGRPVSYE KAVAWKVLNE EDNAHCMSFM FVNWSFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein