PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT24629

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 418aa MW: 48452.1 Da PI: 6.4224

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT24629	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	76.5	4.1e-24	93	188	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 +Wt+q+v++Li+a+++++e+ ++ kk++W++vsk+m+erg +sp+qC++k+++lnkryk+++e+ +++ ++e++++ +++d l+ OIT24629 93 KWTDQMVRLLITAVSYIGEETAAEYggrrkcsnlHKKGKWKSVSKVMAERGHFVSPQQCEDKFNDLNKRYKRLNEILGRGtSCEVVENPALLDVLD 188 7************999988864223344567799******************************************6699999999988876 PP

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence
MMPGNSCFDL QGSMRANHQQ LQHYQSHSKQ GAINANFPLT IGSMQQDCNQ NISLADRGKS 60 ASDEDEPSFT EDAADGLNDL NRGKKATPWQ RVKWTDQMVR LLITAVSYIG EETAAEYGGR 120 RKCSNLHKKG KWKSVSKVMA ERGHFVSPQQ CEDKFNDLNK RYKRLNEILG RGTSCEVVEN 180 PALLDVLDHV SEKGKEEVRK ILNSKHLHYE EMCSYHNGNR LHLPPDLELQ RSLRLALTSR 240 EEHDDNDVRK HLQDDNDEDD HETDLVEDQD EYEENHSLPR DHRLHGMSGG FSKRIKQCQG 300 HEIVTSGNSL TTLDGNRTFR SQPQKANTDA NQMFSGCNKA DIPQKQWMDH RSFQLEEQKI 360 QIQAQMLELE KERFNWKRFS RKKDIELEMM RMENERIKLD NECMALELKR KEMLAENV

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence

MMPGNSCFDL QGSMRANHQQ LQHYQSHSKQ GAINANFPLT IGSMQQDCNQ NISLADRGKS  60
ASDEDEPSFT EDAADGLNDL NRGKKATPWQ RVKWTDQMVR LLITAVSYIG EETAAEYGGR  120
RKCSNLHKKG KWKSVSKVMA ERGHFVSPQQ CEDKFNDLNK RYKRLNEILG RGTSCEVVEN  180
PALLDVLDHV SEKGKEEVRK ILNSKHLHYE EMCSYHNGNR LHLPPDLELQ RSLRLALTSR  240
EEHDDNDVRK HLQDDNDEDD HETDLVEDQD EYEENHSLPR DHRLHGMSGG FSKRIKQCQG  300
HEIVTSGNSL TTLDGNRTFR SQPQKANTDA NQMFSGCNKA DIPQKQWMDH RSFQLEEQKI  360
QIQAQMLELE KERFNWKRFS RKKDIELEMM RMENERIKLD NECMALELKR KEMLAENV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-145	Trihelix family protein

Link Out ? help Back to Top
Ensembl	OIT24629