PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT24671

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

E2F/DP

Protein Properties

Length: 440aa MW: 48732.1 Da PI: 4.3767

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT24671	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	86.2	2.4e-27	119	184	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r+++sL+llt+kf++l++++e+g+++ln++a++L +v ++RRiYDi+NVLe+++liekk kn+i+wkg OIT24671 119 RYDSSLGLLTKKFINLIKHAEDGVLDLNKAADTL---EV--QKRRIYDITNVLEGIGLIEKKLKNRIQWKG 184 6899****************************...99..**************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 440 aa Download sequence
MQQPHHQQRE LPFTSSKPPL GDYHRFSTDP LQQPEAILVK STPLKRKSET ANYKQGVGAQ 60 ITDSGYADVS SPMQTPISGK VGKAQKVPRT SKARSASQAA TSNLGSPSGN NATPVGPCRY 120 DSSLGLLTKK FINLIKHAED GVLDLNKAAD TLEVQKRRIY DITNVLEGIG LIEKKLKNRI 180 QWKGLDVSRP GEVDDSVTSL QAEVENMTIE ERRLDEQTRE MQERLTDLCE DENNQRWLLV 240 TEDDIKSLPC LQNETLIAIK APHGTTLEVP DPDEAVDYPQ RRYRIVLRST MGPIDVYLVS 300 QFEEKFEEIN AVEAPSAMPS TSDFNENETA TLPTEEESGG VDGRIDEKEN QSVCADVGTS 360 QDFASGIMKI VSDVDNEEDY WLLSDADVSI TDIWRADSVL DWNELNVIHE DYSIANVSTP 420 RAQTPPPSTT ELPSANTTGS

Sequence ? help Back to Top

Protein Sequence Length: 440 aa Download sequence

MQQPHHQQRE LPFTSSKPPL GDYHRFSTDP LQQPEAILVK STPLKRKSET ANYKQGVGAQ  60
ITDSGYADVS SPMQTPISGK VGKAQKVPRT SKARSASQAA TSNLGSPSGN NATPVGPCRY  120
DSSLGLLTKK FINLIKHAED GVLDLNKAAD TLEVQKRRIY DITNVLEGIG LIEKKLKNRI  180
QWKGLDVSRP GEVDDSVTSL QAEVENMTIE ERRLDEQTRE MQERLTDLCE DENNQRWLLV  240
TEDDIKSLPC LQNETLIAIK APHGTTLEVP DPDEAVDYPQ RRYRIVLRST MGPIDVYLVS  300
QFEEKFEEIN AVEAPSAMPS TSDFNENETA TLPTEEESGG VDGRIDEKEN QSVCADVGTS  360
QDFASGIMKI VSDVDNEEDY WLLSDADVSI TDIWRADSVL DWNELNVIHE DYSIANVSTP  420
RAQTPPPSTT ELPSANTTGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22220.2	1e-152	E2F/DP family protein

Link Out ? help Back to Top
Ensembl	OIT24671