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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | OIT24833 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family | GRAS | ||||||||
| Protein Properties | Length: 415aa MW: 45882.4 Da PI: 4.9781 | ||||||||
| Description | GRAS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GRAS | 368.6 | 8.6e-113 | 54 | 412 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIl 103
lLl+cAe+v+ ++l a +lL ++ el+sp g++ +R+aayf+eAL+ar+ +s + y+ l+ ++ + ++s++ ++al+ ++ +sP++kfsh taNqaI+
OIT24833 54 GLLLQCAECVAMENLDDAGNLLPEIAELSSPFGSSAERVAAYFAEALSARIISSHLRFYSPLNLKTLTLTHSQKLFTALQSYNTISPLIKFSHYTANQAIY 154
58*************************************************************************************************** PP
GRAS 104 eavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaV 204
+a+e+e++vH+iD+di+qGlQWp L+q L+sR+++ s++iTgvgs s e le+tg+rL++fA+++g+pfef++l k + +l++L vk gE+++V
OIT24833 155 QALESEDHVHVIDLDIMQGLQWPGLFQILSSRSRKLRSVKITGVGS----SMELLESTGRRLTEFANSFGLPFEFKPLEGKIGNITDLSQLGVKMGETIVV 251
**********************************************....***************************988888888*************** PP
GRAS 205 nlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaer 305
n+++ h l+d ++s + +l+ l+Pk++++veq+++h +++Fl rf+eal+yysalfdsl +l+ es er++vE++l+g ei+n+va g +r
OIT24833 252 NWMH--HCLYDITGSDLG----TFRLLTLLRPKLITIVEQDLSH-GGNFLGRFVEALHYYSALFDSLGDGLSVESVERHTVEQQLFGCEIRNIVAVGGPKR 345
***9..777766777777....99********************.789****************************************************8 PP
GRAS 306 rerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
+ + +e+W + l++ GF pv+ls + a+qa+lll +++ +gy++ ee+g+l +gWkd +L+++SaW+
OIT24833 346 TGEVP-VERWGDELKRIGFLPVSLSGTPAAQASLLLGMFP-KGYTLVEENGCLKMGWKDLSLLTASAWQ 412
87765.9*********************************.9**************************6 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 415 aa Download sequence |
MSSKRSIADF TPVLSDEDAL HLSKRPRSNE EEQFEEGEDQ LPVDTDSVGL RLLGLLLQCA 60 ECVAMENLDD AGNLLPEIAE LSSPFGSSAE RVAAYFAEAL SARIISSHLR FYSPLNLKTL 120 TLTHSQKLFT ALQSYNTISP LIKFSHYTAN QAIYQALESE DHVHVIDLDI MQGLQWPGLF 180 QILSSRSRKL RSVKITGVGS SMELLESTGR RLTEFANSFG LPFEFKPLEG KIGNITDLSQ 240 LGVKMGETIV VNWMHHCLYD ITGSDLGTFR LLTLLRPKLI TIVEQDLSHG GNFLGRFVEA 300 LHYYSALFDS LGDGLSVESV ERHTVEQQLF GCEIRNIVAV GGPKRTGEVP VERWGDELKR 360 IGFLPVSLSG TPAAQASLLL GMFPKGYTLV EENGCLKMGW KDLSLLTASA WQPCD |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT5G41920.1 | 1e-161 | GRAS family protein | ||||
| Link Out ? help Back to Top | |
|---|---|
| Ensembl | OIT24833 |




