PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT24857

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HD-ZIP

Protein Properties

Length: 238aa MW: 26562.1 Da PI: 8.8528

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT24857	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.5	2.3e-18	100	154	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk q Lee F+++++++ +++++LA+kl++ rqV vWFqNrRa+ k OIT24857 100 RKKLRLTKVQSALLEESFKQHSTLNPKQKQHLARKLNVRPRQVEVWFQNRRARTK 154 678899***********************************************98 PP
2	HD-ZIP_I/II	120.6	7.9e-39	100	189	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+k q++lLEesF+++++L+p++K++lar+L+++prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en++L kev+eL+ +l OIT24857 100 RKKLRLTKVQSALLEESFKQHSTLNPKQKQHLARKLNVRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENKKLYKEVQELK-AL 189 69*************************************************************************************9.55 PP

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence
MGFDDICGTG LALGFGFSST ANNQRSRKPP ADKGGSLSFE PSLTLSLSKD KSADHLSSST 60 YSNASVKRER DIGSEETEVE RVLSYRVSDE DLDDDVSNGR KKLRLTKVQS ALLEESFKQH 120 STLNPKQKQH LARKLNVRPR QVEVWFQNRR ARTKLKQTEV DCEFLKKCCE TLTDENKKLY 180 KEVQELKALK LAQPLYMQLP AAATLTVCPS CERVADAGEK APTKPHFYGP FTSPSAAC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	149	157	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	1e-88	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	OIT24857