PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT25152
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 330aa    MW: 36810.8 Da    PI: 9.7618
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT25152genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP92.58.6e-2954137383
       TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssas 83 
               g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk  +WLl + k++i++l+ ++ +++s +   +++++  + +
  OIT25152  54 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVMDWLLDATKHEIDKLPPLQMPPSSLShffNNSTNTYMRD 137
               79*************************************************************999994333333333333333 PP
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    
MNPSRNNSQA NKQEAGHDHD TIKSKISRTP SSSSRQSWAG FKNPRIVRVS RSFGGKDRHS  60
KVCTIRGLRD RRIRLSVPTA IQLYDLQDRL GLSQPSKVMD WLLDATKHEI DKLPPLQMPP  120
SSLSHFFNNS TNTYMRDGPN QELLSLKESN HFDVTTPFGK DKWIASNEQE NQEGTNIGGY  180
VPLFSSQNIS SLPAGMLNSN IPFRYNYHNS ELPNSNLSLT PFGNNNLSFS SQTEDNLPIS  240
MSFPSGSHHL YFCPTATTLS SSVPAPFMST TNSQLNHFHS LNSSTNSQHV LPNPLAPTLQ  300
LISSPVKTSK TNNDHPKRIN SQDNGDQHNQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.13e-41TCP family protein