PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT25275
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 84aa    MW: 9491.95 Da    PI: 10.3238
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT25275genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.82.6e-0525531245
              HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHH CS
       HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLe 45
              +    N+ f++Lr+llP+      +K +Ka++L 
  OIT25275 25 YATSTNENFQQLRSLLPPG-----TKKDKASVLA 53
              55678************96.....5777777775 PP
Sequence ? help Back to Top
Protein Sequence    Length: 84 aa     Download sequence    
MLNRSMTFFK NLYLMRRQEQ IQVNYATSTN ENFQQLRSLL PPGTKKDKAS VLATTTFCGI  60
ASYSKGKMQH IGFGYSFVGI LESG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.11e-08bHLH family protein