PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT25365
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 234aa    MW: 26551.1 Da    PI: 9.3629
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT25365genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.12e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEd +++ +v+ +G g+W++++++ g++R++k+c++rw +yl
         OIT25365 14 RGPWTAEEDAKILAYVATHGIGNWTLVPQKAGLNRCGKSCRLRWTNYL 61
                     89********************************************97 PP
2Myb_DNA-binding50.64.4e-1668110246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++T++E+e +++++k  G++ W++Ia+ ++ gRt++++k++w++
         OIT25365  68 DNFTPQEEECILELHKTIGSR-WSLIAKQLP-GRTDNDVKNYWNT 110
                      68*******************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    
MGRPPCCDKA NVKRGPWTAE EDAKILAYVA THGIGNWTLV PQKAGLNRCG KSCRLRWTNY  60
LRPDLKHDNF TPQEEECILE LHKTIGSRWS LIAKQLPGRT DNDVKNYWNT KLKKKLVNMG  120
IDPVTHKPFA QVFAEYGKIS GLPIQNARNH ICLPNNTTEI SRQFPFSSGT PHDKFVHKIM  180
NDQLQENYST QKYSFSEVSP LISSATSFDP TVFSSSSSYA SVQSQVRVNF TYDH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.12e-79MYB family protein