PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT25718
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 352aa    MW: 39315.1 Da    PI: 7.4815
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT25718genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.3e-07128148526
               --SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                C++f++ G Ck Gd C +aHg
  OIT25718 128 ACPDFRK-GLCKKGDACEYAHG 148
               7******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    
MMMIGRSPHS HPTVQVPPWD VMDDPTVDVH SPFSVTPNNY STSPDSGFDA LTALQRYLPS  60
NANDVLFDSD GLDIPVDAFS CDNFRMYEFK VRKCARGRSH DWTECPYAHP GEKARRRDPR  120
KYHYSGTACP DFRKGLCKKG DACEYAHGVF ECWLHPARYR TQPCKDGTHC RRRVCFFAHT  180
PEQLRLLPQN SPRSHAAESC DSFDGSPSRF GFDSFSSSPP FDSPPMTPSG SLSLNSINGL  240
AESMRNMQIG MVRGMSSPTW GLQMGSPGFG SPRSPSTLRP GFMSLPTTPT RNPTRSGRAV  300
FDHWEKTCEE EPAMERVESG RDLRARIYAK LSMENSLDSG APDVGWVSEL VK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.11e-107C3H family protein