PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT26058
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 190aa    MW: 21744.4 Da    PI: 9.5185
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT26058genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF34.33e-112162142
              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
              k+ ++k+  +v +s+ ++ + K A  LS+LC++++a+iifs 
  OIT26058 21 KFLKDKRAEKVALSNKQKALSKRAMDLSTLCGIDIAIIIFSI 62
              57789999********************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    
MSCCVIMARM TSQMKSKFEK KFLKDKRAEK VALSNKQKAL SKRAMDLSTL CGIDIAIIIF  60
SITVEPFLFG NPNVESVVER FSQANQPFYR MTSRKMAHEK VGGCEENDIM KKKKMKAINE  120
EDKGESTLEI FKPTNLERLE KLKQEIDELE RNLTEKIDEL QSKIGVTNPK FVPEMNATKS  180
LAMPSNWLSL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.17e-13M-type_MADS family protein