PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT26143

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C3H

Protein Properties

Length: 644aa MW: 69370.2 Da PI: 6.713

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT26143	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28.4	2.9e-09	276	296	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ GtC++Gd+C +aHg OIT26143 276 PCPDFRK-GTCQRGDTCEYAHG 296 8****.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 644 aa Download sequence
MCSGSKSKVC SADLAMEAEI QKQKDLVPSF SLLLELSASD DIINFQKAVE EEGHDMNEVG 60 LWYGRRIGIK NMGYEERTPL MIAATFGSKR VLNYMLEKGC LDVNQACGSD GATALHCAIA 120 GDSAALLEVV KLLLGASADV NLVDANGKRA VDLISAQGCC LNSRRKILEY LLGGSSDDGE 180 ASGLIDQIIS EQAEEQLLLT PNISKFGSEK KEYPVDPSLP DIKIGIYGTD DFRMYIFKVK 240 PCSRAYSHDW TECPFVHPGE NARRRDPRKY HYSCVPCPDF RKGTCQRGDT CEYAHGIFEC 300 WLHPAQYRTR MCKDETNCNR RVCFFAHKPE ELRPLYPSTG SAVLSPRSYS NSALSLDIAS 360 ISPLALGSPS IMMPPTSTPP MSPSAGASSV GGSLWPCQSS LATPTLQLPI SRLKTTYSAR 420 DVELDNGLLG FDSHHLRQDQ LMDDLSALSS PSGWNSSSAK AAAFAASSSD RNGEFGRHGG 480 LNPTNLDDIL ATLDSKILSQ LQGLSLDAGS PQLQSPKGMQ MRQNMNQQLM TGYSSGQSSP 540 SFRTSSSFGI DPSGAAAAAL SSRSAAFAKR SQSFIDRSAA GRLSGISSSL SNASAVLPNL 600 SGWGSPDGKL DWGIQKEELN KLRKSASFGL RSSGSRFAMS ESSI

Sequence ? help Back to Top

Protein Sequence Length: 644 aa Download sequence

MCSGSKSKVC SADLAMEAEI QKQKDLVPSF SLLLELSASD DIINFQKAVE EEGHDMNEVG  60
LWYGRRIGIK NMGYEERTPL MIAATFGSKR VLNYMLEKGC LDVNQACGSD GATALHCAIA  120
GDSAALLEVV KLLLGASADV NLVDANGKRA VDLISAQGCC LNSRRKILEY LLGGSSDDGE  180
ASGLIDQIIS EQAEEQLLLT PNISKFGSEK KEYPVDPSLP DIKIGIYGTD DFRMYIFKVK  240
PCSRAYSHDW TECPFVHPGE NARRRDPRKY HYSCVPCPDF RKGTCQRGDT CEYAHGIFEC  300
WLHPAQYRTR MCKDETNCNR RVCFFAHKPE ELRPLYPSTG SAVLSPRSYS NSALSLDIAS  360
ISPLALGSPS IMMPPTSTPP MSPSAGASSV GGSLWPCQSS LATPTLQLPI SRLKTTYSAR  420
DVELDNGLLG FDSHHLRQDQ LMDDLSALSS PSGWNSSSAK AAAFAASSSD RNGEFGRHGG  480
LNPTNLDDIL ATLDSKILSQ LQGLSLDAGS PQLQSPKGMQ MRQNMNQQLM TGYSSGQSSP  540
SFRTSSSFGI DPSGAAAAAL SSRSAAFAKR SQSFIDRSAA GRLSGISSSL SNASAVLPNL  600
SGWGSPDGKL DWGIQKEELN KLRKSASFGL RSSGSRFAMS ESSI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58620.1	1e-157	C3H family protein

Link Out ? help Back to Top
Ensembl	OIT26143