PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT26171
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 330aa    MW: 36789.5 Da    PI: 10.4172
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT26171genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP135.35.2e-42912132130
       TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaakskksqk 102
               ++kkdrhski T++g RdRRvRls+ +a++fFdLqd+LGfdk+skt++WL++++k ai elt  + ++ s   +++  s++s ss+++++k+   s+ +++
  OIT26171  91 PVKKDRHSKILTSQGHRDRRVRLSIGVARKFFDLQDMLGFDKPSKTLDWLFTKSKLAIEELTTGQMKTTS---PNE--SKKSPSSINSECKDVVISR-AKQ 185
               68************************************************************99555552...222..2333345666777775444.444 PP

       TCP 103 saasalnlakesrakarararertrekm 130
               ++a  + +a+esrakarararert +k 
  OIT26171 186 EEAILHLVARESRAKARARARERTIKKV 213
               4555677777**************8875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    
MFPSGNSNGN PILHCSIPSF HSSNSSFIGL NGNQILLHQH QDQLSTHYLA ANNGHLIDNS  60
SSVMMFANNV IHNKSNNQEI GCPLNKMIKK PVKKDRHSKI LTSQGHRDRR VRLSIGVARK  120
FFDLQDMLGF DKPSKTLDWL FTKSKLAIEE LTTGQMKTTS PNESKKSPSS INSECKDVVI  180
SRAKQEEAIL HLVARESRAK ARARARERTI KKVWSQIEAK INSSSVVVKE QTKIDEIKQM  240
IHGSVLVERK NIKSSSSTLG FHHQNLSGTE EAAANSHYNS SSSSSTRNWD HDVNRTIMNS  300
SLNAVMATIS TSSQVVQGQK AWDSYHCSQI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.22e-31TCP family protein