PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT26203

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 156aa MW: 18004.8 Da PI: 9.3329

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT26203	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.6	0.00086	46	68	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs+ L H +H OIT26203 46 FECKTCNRQFSSFQALGGHRASH 68 89**********99999998887 PP

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence
MVVYPMKRER ESEFDSIITM ANYLMLLSRQ ENHNFETINN SPSRVFECKT CNRQFSSFQA 60 LGGHRASHKK PRLMGELNYH QLPTSPPKPK THECSICGLE FPIGQALGGH MRRHRAMLNE 120 NIHVVKKSKS PRVLCLDLNL TPLENDLEFK LKETVL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28710.1	6e-38	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT26203