PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT26266

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 230aa MW: 25649 Da PI: 9.2438

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT26266	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.6	9.3e-05	53	75	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H+++H OIT26266 53 YTCSFCKREFRSAQALGGHMNVH 75 9********************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence
MEKSSSFSSK YLKNQTIKEL NNNNNVKELW DNSCEGTVDG DLIGGFLWPP RSYTCSFCKR 60 EFRSAQALGG HMNVHRRDRA RLRLQSSPPK DNGTTHYSLL NLNLEPNPNP NPNINPSFVS 120 SPPSSPSRKF PPFVSTLPPL LSPFSSSTSS GSEMRKWGKD GVPLNHLSER KNGDLTKMGS 180 AKFEKIGSLL QGKECCEVVK RSEFLRLDLG IGLLSESKED LDLELRLGYT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23130.1	2e-25	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT26266