PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT26319

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C3H

Protein Properties

Length: 433aa MW: 47247.6 Da PI: 8.6799

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT26319	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.3	1.9e-11	48	73	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+++ rtG C++G++C+F+H+p OIT26319 48 GEPDCSYYIRTGLCRFGSTCRFNHPP 73 6899********************97 PP
2	zf-CCCH	40.1	5.9e-13	93	118	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tGtCk+G++CkF+H++ OIT26319 93 GQPECQYYLKTGTCKFGATCKFHHPK 118 5799********************96 PP
3	zf-CCCH	39.4	9.9e-13	140	164	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+Ck+G++CkF+H++ OIT26319 140 EAECAYYMRTGQCKFGSTCKFHHPQ 164 689********************97 PP
4	zf-CCCH	37.9	2.9e-12	293	319	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ OIT26319 293 PGQPECQFYMKTGDCKFGAVCRFHHPR 319 5789*********************96 PP
5	zf-CCCH	40.2	5.8e-13	339	365	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ OIT26319 339 PGEPLCIFYSRYGICKFGPSCKFDHPM 365 589**********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence
MDFDAGISLS VTEGPSSLSP SLHQDTLWQM NLRSRESIES GHYPVRDGEP DCSYYIRTGL 60 CRFGSTCRFN HPPNRKLAIA TARMKGEYPE RMGQPECQYY LKTGTCKFGA TCKFHHPKDK 120 AGIAGRVTLN VLGYPLRPNE AECAYYMRTG QCKFGSTCKF HHPQPSNMMV SLRGSPVYPP 180 VPSATTPGQL SYPLSRGSFI PGARWQAPSS YTPLIMPQGV VSVPGFAYSG QMGSVSSPEG 240 QQQTAGNSQV YGTSRSGDAA NMGSQGVTSP YRPASVPMGY YALQGENVFP ERPGQPECQF 300 YMKTGDCKFG AVCRFHHPRE RLIPPPDCML SPIGLPLRPG EPLCIFYSRY GICKFGPSCK 360 FDHPMTVFTY SISASSTTDA PTVQRLLGST SGTSALTLTS DGLVEAVSTK PRRLSLSETR 420 KMPPGDNNID REG

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence

MDFDAGISLS VTEGPSSLSP SLHQDTLWQM NLRSRESIES GHYPVRDGEP DCSYYIRTGL  60
CRFGSTCRFN HPPNRKLAIA TARMKGEYPE RMGQPECQYY LKTGTCKFGA TCKFHHPKDK  120
AGIAGRVTLN VLGYPLRPNE AECAYYMRTG QCKFGSTCKF HHPQPSNMMV SLRGSPVYPP  180
VPSATTPGQL SYPLSRGSFI PGARWQAPSS YTPLIMPQGV VSVPGFAYSG QMGSVSSPEG  240
QQQTAGNSQV YGTSRSGDAA NMGSQGVTSP YRPASVPMGY YALQGENVFP ERPGQPECQF  300
YMKTGDCKFG AVCRFHHPRE RLIPPPDCML SPIGLPLRPG EPLCIFYSRY GICKFGPSCK  360
FDHPMTVFTY SISASSTTDA PTVQRLLGST SGTSALTLTS DGLVEAVSTK PRRLSLSETR  420
KMPPGDNNID REG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	0.0	C3H family protein

Link Out ? help Back to Top
Ensembl	OIT26319