PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT26367
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 215aa    MW: 24864.6 Da    PI: 8.9526
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT26367genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.47e-181259148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W +eEd++l+++v+ +G g+W+tI+++ g+ R++k+c++rw +yl
         OIT26367 12 RGFWKPEEDLILKNCVETHGEGNWATISEKSGLMRSGKSCRLRWKNYL 59
                     799*******************************************97 PP
2Myb_DNA-binding49.87.7e-1665110148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg ++++E +l+++++k+lG++ W++Ia +++ gRt++++k++w+++l
         OIT26367  65 RGMMSEDEKDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEVKNFWNTHL 110
                      6789******************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    
MMDKEFKTRM KRGFWKPEED LILKNCVETH GEGNWATISE KSGLMRSGKS CRLRWKNYLR  60
PNIKRGMMSE DEKDLIIRLH KLLGNRWSLI AGRLPGRTDN EVKNFWNTHL NKRSCRGKKK  120
HVKSKEANSR SPLGKESQEI PAETVSNKEV AANSVLDSWI EEMQDFNCSL LSPLSMNNVP  180
FLEDEPFIPI LDDIVLLEAF TSTGKEAWNE IQPFL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.11e-62MYB family protein