PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT26419
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 201aa    MW: 23062.9 Da    PI: 8.7637
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT26419genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF74.39.5e-24957149
              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
              krien   rqvtf+kRr+g+lKKA+ELSvLCdae+ + ifs +gk ye 
  OIT26419  9 KRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLFIFSAHGKRYEL 57
              79*******************************************9985 PP
2K-box561.7e-19831749100
     K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
               +++++a   + e++ Lk eie Lqr +  + G + ++++l eL++Le+ Le  + +iRs K+++++++i+ l++ke  lq +nk+L+ k+ee
  OIT26419  83 AKDKQALDPKGEINMLKHEIEVLQRGLSYMYGGGAGTMTLDELHSLEKYLELWMFHIRSAKMDIMFQEIQLLKNKEGILQAANKYLQDKIEE 174
               55666677788******************************************************************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    
MARGKVQMKR IENPVHRQVT FCKRRAGLLK KAKELSVLCD AEIGLFIFSA HGKRYELATK  60
GTMQGLIEKY LKSTRGAEVA EEAKDKQALD PKGEINMLKH EIEVLQRGLS YMYGGGAGTM  120
TLDELHSLEK YLELWMFHIR SAKMDIMFQE IQLLKNKEGI LQAANKYLQD KIEEQYPVPN  180
MTSTLTDFQC PLTVQNEIFQ F
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.17e-83MIKC_MADS family protein