PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT26558
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 218aa    MW: 24790.4 Da    PI: 10.3195
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT26558genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.65.2e-212163749
              HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
    SRF-TF  7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 qvtfskRr g++KKA+EL++LC++e+a+i+fs+  k++ +
  OIT26558 21 NHLQVTFSKRRSGLFKKASELCTLCGVEIAIIVFSPARKVFSF 63
              5669*********************************999887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    
MAKKPSIGRQ KIKIAKTEVK NHLQVTFSKR RSGLFKKASE LCTLCGVEIA IIVFSPARKV  60
FSFGHPNVES IVDRFLSRNH NPISNSSLHL VETHRNASVR ELNLQLTQIL AEFEVEKKRG  120
ESLDQMRKTS QSQYWWEAPI SKLALHELEQ LKDSMEVLKK NVRNQASKFM VETANSSSLF  180
GVNGNGIFDN YDIKPARNMV ASNNLHNHNF GFDSAEMF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-61M-type_MADS family protein