PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT26559
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 185aa    MW: 21504.5 Da    PI: 9.9723
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT26559genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.12.3e-181663249
              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
              +ien++nrqvtfsk rn ++KKA+EL v+++aev + +fs+ +kly +
  OIT26559 16 KIENETNRQVTFSKSRNIVFKKANELAVMTGAEVGINVFSPANKLYFF 63
              79*******************************************976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    
MSTRLIKGRK KVLLAKIENE TNRQVTFSKS RNIVFKKANE LAVMTGAEVG INVFSPANKL  60
YFFGHPNVNE TIDKYVGKER PPTPSSPGID DKYVQMSRKV NSRALITQLD YLQDQLDFAL  120
NFKSNLKEIN KNVDSQQEWF RDPIEKMNYT EASMLKERLE NLLLKVKNYG TERGYGYENE  180
RRKDE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-28M-type_MADS family protein