PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT26561
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 228aa    MW: 25515.2 Da    PI: 10.2665
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT26561genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF72.24.5e-231762449
              -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
    SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
              +n+sn qvtfskRr+g++KKA+EL++LC+ae+a+++fs+  k+y +
  OIT26561 17 QNESNLQVTFSKRRAGLFKKASELCTLCGAEIALVVFSPGKKVYSF 62
              79******************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    
MAKRSKGRQK IDMVKMQNES NLQVTFSKRR AGLFKKASEL CTLCGAEIAL VVFSPGKKVY  60
SFGHPCVDSV VDRFLTRNSP PNNDHNQLIV AHRNASVRDL NMELMNIEGI LLMEKNHGEA  120
LQARKRDNGH WWEAPIEELN FFQLQQLKEA MECIKKKVER EAQNQQMVTG NAFPFLAFGS  180
ALAPTSARAR SSYGSYGSFP FQNRVSGLNF GVPYANRSSG STSSIVPK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.18e-60M-type_MADS family protein