PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT26735

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

YABBY

Protein Properties

Length: 189aa MW: 20961.8 Da PI: 8.4929

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT26735	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	230	6e-71	8	163	4	170
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsen 104 ssse+vCyv+CnfCntilavsvP +s++++vtvrCGhC++llsvn+ q l+ ++ l+++ + ++ + k ++s++++++ + + ++ OIT26735 8 SSSSERVCYVHCNFCNTILAVSVPCSSMMTIVTVRCGHCANLLSVNIGSLLQSLPLQD-LEKQQRSNIEDASKAC---------GSSSSTNYHRFSAIGTS 98 6899*************************************************999.5555555554444433.........34445555555566667 PP YABBY 105 edeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +++ pr+ p irPPekrqrvPsaynrfikeeiqrikasnPdi+hreafs+aaknWahfP+ihfgl OIT26735 99 PEDDQPRTMP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDITHREAFSTAAKNWAHFPHIHFGL 163 7777888888.9**************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence
MSLDITYSSS SERVCYVHCN FCNTILAVSV PCSSMMTIVT VRCGHCANLL SVNIGSLLQS 60 LPLQDLEKQQ RSNIEDASKA CGSSSSTNYH RFSAIGTSPE DDQPRTMPIR PPEKRQRVPS 120 AYNRFIKEEI QRIKASNPDI THREAFSTAA KNWAHFPHIH FGLKLEGNKQ AKLDHAVAGE 180 GPQKSIGLY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	2e-76	YABBY family protein

Link Out ? help Back to Top
Ensembl	OIT26735