PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT26741
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 253aa    MW: 28074.2 Da    PI: 8.5162
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT26741genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1233.5e-38361622126
       TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssaseceaesssssasnsssg.. 88 
               +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++akpai+el+++            s+s+a+ +              +  
  OIT26741  36 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKPAIDELAELpawkpslgsvsvSASAANTS--------------Nle 122
               79**************************************************************44444333322211111111..............111 PP

       TCP  89 .kaaksaa.kskksqksaasalnlakesrakarararert 126
                +++++++ + +++++ ++ + n a  s+++a a+ r++t
  OIT26741 123 qDQSQDENfTFHQENATTSLFDNAAGPSNKRAMATLRNET 162
               1222222212233333333333333344444444444433 PP
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    
MGDSQHQNHR TTSRLGIRST VGEIVEVQGG HIVRSTGRKD RHSKVCTAKG PRDRRVRLSA  60
HTAIQFYDVQ DRLGYDRPSK AVDWLIKKAK PAIDELAELP AWKPSLGSVS VSASAANTSN  120
LEQDQSQDEN FTFHQENATT SLFDNAAGPS NKRAMATLRN ETNTSGSFLP PSLESDAIAD  180
TIKSFFPMGS STATNSSAMQ FQSFHQETNN MLSRTSIQNQ DLRLSLQFQD PILLHHQNQH  240
PNKTYATEIL LLL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.25e-72TCP family protein