PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT26746

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 348aa MW: 39056.2 Da PI: 6.5064

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT26746	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.5	2e-15	25	72	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l ++ G g+W+ Iar g+ R++k+c++rw +yl OIT26746 25 KGLWSPEEDEKLMNYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYL 72 678*******************************************97 PP
2	Myb_DNA-binding	50.3	5.6e-16	78	121	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E+e +v+++ lG++ W+ Ia++++ gRt++++k++w++ OIT26746 78 RGAFSPQEEEHIVHLHSILGNR-WSQIAARLP-GRTDNEIKNFWNS 121 89******************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence
MRKPDHPSIM KEKGNNNNSK AKLRKGLWSP EEDEKLMNYM LTNGQGCWSD IARNAGLQRC 60 GKSCRLRWIN YLRPDLKRGA FSPQEEEHIV HLHSILGNRW SQIAARLPGR TDNEIKNFWN 120 STIKKRLKNN NSNNNNSNNN TSSPNTSYSS SEPRAFMGGI IPMQGHDVNH VMAAICMDNS 180 SSSSNHFNPF PQIDNTNYDI IGAGLYNFPP CLGQFDGDGG VVDYGVVENY CTLGLGSDFS 240 IPTLEGGENK SMGEINNNVN FSSSNITTAN IDYNSLIEKK TNGNNNQQLM LSESSDQSLK 300 VEDYMVGFGN HHHHQHHWHG ESLRIGEFDW EGLLANVSSL PYLDFQVE

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence

MRKPDHPSIM KEKGNNNNSK AKLRKGLWSP EEDEKLMNYM LTNGQGCWSD IARNAGLQRC  60
GKSCRLRWIN YLRPDLKRGA FSPQEEEHIV HLHSILGNRW SQIAARLPGR TDNEIKNFWN  120
STIKKRLKNN NSNNNNSNNN TSSPNTSYSS SEPRAFMGGI IPMQGHDVNH VMAAICMDNS  180
SSSSNHFNPF PQIDNTNYDI IGAGLYNFPP CLGQFDGDGG VVDYGVVENY CTLGLGSDFS  240
IPTLEGGENK SMGEINNNVN FSSSNITTAN IDYNSLIEKK TNGNNNQQLM LSESSDQSLK  300
VEDYMVGFGN HHHHQHHWHG ESLRIGEFDW EGLLANVSSL PYLDFQVE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08500.1	5e-71	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT26746