PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT26796
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 745aa    MW: 84209.2 Da    PI: 5.8278
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT26796genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS369.35.1e-1133727422373
      GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102
               ++lL++cA+ v+++d + a++ L+++++++sp+gd+ qRla++f+ +L+arla+++++ y+al+p++ +    +e+l+a++++   +P+ k+s + aN++I
  OIT26796 372 RTLLISCAQSVAADDRRTANEQLKQIRQHSSPTGDAYQRLASVFADGLEARLAGTGTQQYAALAPKRIT---AAEKLKAYQVYLSSCPFKKISIFFANKMI 469
               789*************************************************************99999...9**************************** PP

      GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEa 201
                  +++++++H iDf+i++G+QWp L+q L++ p+gpp+lRiTg++ p++g   +e+le+tg+rLak++e+++vpfe+n+++++++e++++e+L++ +gE+
  OIT26796 470 FHTASNARTLHLIDFGITYGFQWPILIQLLSQIPGGPPKLRITGIDLPQPGfrPAESLEQTGSRLAKYCERFHVPFEYNAIATQNWENIKIEDLKLLSGET 570
               **************************************************9******************************999***************** PP

      GRAS 202 laVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvaceg 302
               +aVn+ ++l++llde+v ++s+rd+vL+l+++++P+++v +  + +++++ F++rf eal +ys+lfd+++a+lpr++++r   E+e+ +re++nv+aceg
  OIT26796 571 VAVNCLFRLKNLLDETVVVDSPRDAVLSLIRKMNPDIFVQAVVNGSYSAPFFVTRFREALFHYSTLFDMFDATLPRDDQQRLHFEQEFYRREAMNVIACEG 671
               ***************************************************************************************************** PP

      GRAS 303 aerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
               +er+er et+++W+ r ++aGFk +pl+++ +++ ++ ++  + + +  +e+ +++++gWk+r + + S+W
  OIT26796 672 SERVERPETYKQWQVRNMRAGFKLLPLNQQLMQKLRCKVKGGYHRDFVFDEDGNWMLQGWKGRVVCASSCW 742
               *******************************************999************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 745 aa     Download sequence    
MDPRFNPLPH PVNTFEFEDQ INLSRFEESL NHPLSYTDNY VAFGAPYNTS SPDVGNFAPS  60
SNVSSEVDSP DDHDSDSLFK YLNQILMEEN IEDKPSMFHD PLALKAAEKS FYEALGKSYP  120
PSPYRTSDYV DHQLKSPDSN FWNSSEHSTS SSNTGTNSTD PQWVVDPGES RLPVESHPSE  180
YNVQPLVQSN SERSHGSVNN FNNSNAHVDS LVNPNVFTDS ESILQFKRGM EEASKFLPNL  240
SQFVIDLDKY SLPPKMEEVS KEAVVKVEKD EKNHSPNGTK GRKHQYPEDS DHEDERSNKQ  300
SAIYVEEEVE LSEMFDRVLL CTDKGTGCGD VKREMPSEVN KCSGQNGQAH GSNGGKTRAK  360
KQGTKNEAVD IRTLLISCAQ SVAADDRRTA NEQLKQIRQH SSPTGDAYQR LASVFADGLE  420
ARLAGTGTQQ YAALAPKRIT AAEKLKAYQV YLSSCPFKKI SIFFANKMIF HTASNARTLH  480
LIDFGITYGF QWPILIQLLS QIPGGPPKLR ITGIDLPQPG FRPAESLEQT GSRLAKYCER  540
FHVPFEYNAI ATQNWENIKI EDLKLLSGET VAVNCLFRLK NLLDETVVVD SPRDAVLSLI  600
RKMNPDIFVQ AVVNGSYSAP FFVTRFREAL FHYSTLFDMF DATLPRDDQQ RLHFEQEFYR  660
REAMNVIACE GSERVERPET YKQWQVRNMR AGFKLLPLNQ QLMQKLRCKV KGGYHRDFVF  720
DEDGNWMLQG WKGRVVCASS CWVPA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0GRAS family protein