PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT26853

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 627aa MW: 72843.9 Da PI: 7.0615

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT26853	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	77.7	2.3e-24	23	114	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 ++Y+++A++ GFs+rk++s++s++ g i++r+fvC+++g+++++kk+++++ r r++ r+gC+akl ++ke ++w+v+++++ HnHel OIT26853 23 EYYSNFARKNGFSIRKARSTESQNLG-IYRRDFVCYRSGFNQPRKKANVEHPRDRKSVRCGCDAKLYLTKEIvdgVAQWYVSQFSNVHNHELL 114 69******************8888.**************************************998766789***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 627 aa Download sequence
SSQDAVFTPY VGQIFKSDDE AFEYYSNFAR KNGFSIRKAR STESQNLGIY RRDFVCYRSG 60 FNQPRKKANV EHPRDRKSVR CGCDAKLYLT KEIVDGVAQW YVSQFSNVHN HELLEDDQVR 120 LLPAYRKIQE ADQERILLLS KAGFPVNRIV KVLELEKGVQ PGHLPFIEKD VRNFVRTCKK 180 TVQENDALIT EKRENDLLEL LEACKASQQK DEGFIYSFTT DENGRVENIA WSYGQSLRAY 240 SFFGDVVTFD TTYRSITYNM VLGVWFGINN NGNAIFFGCV LLQDETSQSF SWALQSFVRF 300 MRGKQPQTIV TDIDSGLRDA IASEMPNTKH VICLWQVLSK LSSWFSLPLG LQYPDFKSEF 360 DMLCRLENVE DFEHQWNHLV ARFGVGSDKH IALLLSYRTS WPISYTRNFF LARTMTIEYW 420 KLIETFMKNI LSPQSSLLLF FEQVGLASNF GNHNKEKRLY MPAKTCLPLE EHARSVLTSY 480 AFNVMQHEIM LSMQYAITEM ANSSYLARHY KKMEAECLVI WIPEDEEVHC SCKEFEHSGI 540 LCRHSIRMLV SKNYFQIPEK YFPLRWRLES SLAPTDESVI QSSASEYSQV FHALSGSLYS 600 ESFISKQRVN YVNRELKQLL ENVQNMP

Sequence ? help Back to Top

Protein Sequence Length: 627 aa Download sequence

SSQDAVFTPY VGQIFKSDDE AFEYYSNFAR KNGFSIRKAR STESQNLGIY RRDFVCYRSG  60
FNQPRKKANV EHPRDRKSVR CGCDAKLYLT KEIVDGVAQW YVSQFSNVHN HELLEDDQVR  120
LLPAYRKIQE ADQERILLLS KAGFPVNRIV KVLELEKGVQ PGHLPFIEKD VRNFVRTCKK  180
TVQENDALIT EKRENDLLEL LEACKASQQK DEGFIYSFTT DENGRVENIA WSYGQSLRAY  240
SFFGDVVTFD TTYRSITYNM VLGVWFGINN NGNAIFFGCV LLQDETSQSF SWALQSFVRF  300
MRGKQPQTIV TDIDSGLRDA IASEMPNTKH VICLWQVLSK LSSWFSLPLG LQYPDFKSEF  360
DMLCRLENVE DFEHQWNHLV ARFGVGSDKH IALLLSYRTS WPISYTRNFF LARTMTIEYW  420
KLIETFMKNI LSPQSSLLLF FEQVGLASNF GNHNKEKRLY MPAKTCLPLE EHARSVLTSY  480
AFNVMQHEIM LSMQYAITEM ANSSYLARHY KKMEAECLVI WIPEDEEVHC SCKEFEHSGI  540
LCRHSIRMLV SKNYFQIPEK YFPLRWRLES SLAPTDESVI QSSASEYSQV FHALSGSLYS  600
ESFISKQRVN YVNRELKQLL ENVQNMP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1 family protein

Link Out ? help Back to Top
Ensembl	OIT26853