PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT26865
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 225aa    MW: 25374.6 Da    PI: 8.0521
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT26865genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF59.34.8e-192061142
              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
              k+i+n+  r+vtfskRr g++KKA+EL++L +ae+a+++ s 
  OIT26865 20 KPIDNQNSRHVTFSKRRLGLFKKASELCILSGAEIAILVQSL 61
              68*************************************984 PP
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    
MNTTISTMKK TQGRRKIAIK PIDNQNSRHV TFSKRRLGLF KKASELCILS GAEIAILVQS  60
LKRQRLFAFG HPNADAVIDR YLTGKSSSSS STVDQLNVQQ NNQYYSQICR ELEAEKKKKE  120
IIENSKIVNN NSNNEGFWWN ESIDDMGIEE LEEFMGALEE LKKKITLRAD ELSMINGSSV  180
VPTASTLNNN IARFGAEDQF LNQAAIDYCS SIVPYQFNHP GDGQF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.19e-24M-type_MADS family protein