PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT26866
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 218aa    MW: 24711.2 Da    PI: 10.1965
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT26866genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.23.3e-211663249
              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
              +ie k   qvtfskRr g++KKA+EL++LC++e+a+i+fs+  k++ +
  OIT26866 16 KIEVKNHLQVTFSKRRYGLFKKASELCTLCGVEIAIIVFSPARKVFSF 63
              58888899**********************************999887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    
MAKKPSIGRQ KIKIAKIEVK NHLQVTFSKR RYGLFKKASE LCTLCGVEIA IIVFSPARKV  60
FSFGHPNVES IVDRFLSRNH NPVSNSSLHL VEAHRNASVR ELNLQLTQIL AELEVEKKRG  120
ESFDQMRKTS QSQYWWEAPI SKLGLHELEQ LKDSMEVLKK NVTNQASKFM VETTANSSYF  180
GVNGNGIFDN YDIKPARNMA ASNNLHNHNF GFDSAGLF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.16e-61M-type_MADS family protein