PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT26867
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 185aa    MW: 21224.8 Da    PI: 10.5817
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT26867genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.27e-211863449
              -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
    SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
              + +sn  vtfskRr g++KKA+EL++LC++e+a+i+fs+  k++ +
  OIT26867 18 SKESNLLVTFSKRRSGLFKKASELCTLCGVEIAIIVFSPGHKVFSF 63
              6678999********************************9999877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    
MARKMSKGRQ KIQMTKMSKE SNLLVTFSKR RSGLFKKASE LCTLCGVEIA IIVFSPGHKV  60
FSFGHPNVES IIDRFLTRNI PSNTTANSSS TTCQLVEAHR NANVRELNKQ LMEILNQLEF  120
EKKREVELVK INKAKIGKNW WERPVNELGH AELEQLKLGM EELKKNVTKQ MQKIFIESSN  180
TPAFF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-62M-type_MADS family protein