PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT26869

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 374aa MW: 41774.3 Da PI: 7.0564

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT26869	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20	1.9e-06	154	175	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C Cgk F+r nL+ H+r H OIT26869 154 FCDFCGKGFKRDANLRMHMRAH 175 6*******************99 PP
2	zf-C2H2	11.7	0.00081	239	262	1	23
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 y+C+ C+ ksFs +Lk+H++ + OIT26869 239 YSCTRCNkKSFSVLADLKSHLKHC 262 99*******************977 PP
3	zf-C2H2	11.8	0.00074	270	286	5	21
TTTEEESSHHHHHHHHH CS zf-C2H2 5 dCgksFsrksnLkrHir 21 Cg+sFsrk+ L H+ OIT26869 270 SCGTSFSRKDKLFGHMA 286 5**************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence
MSFFGDLRHT LAKTKPPLTT ISAASMIGDD PRAPLLNLSA VQARMDTLQK FLSDSVNSNT 60 LLGQHQMNMV SDEITSAIHQ IIVNGAALLS STQSTNHPPQ LPELKINPKS NHKRTFSEFD 120 RRGSEVKVLE EEDGDDLEII ELDAVELLAE HIHFCDFCGK GFKRDANLRM HMRAHGNQYK 180 TPEALAKPDK CIESGSKNRR FSCPFVGCCR NKSHSKFRPL KSAICVKNHF KRSHCPKMYS 240 CTRCNKKSFS VLADLKSHLK HCGETKWKCS CGTSFSRKDK LFGHMALFEG HMPAIEPEEE 300 AKPPAAVEDD VEMDVSRGSD NGFLDIRTGS DNGFMDRLML DGFESIDSYC FQDLLGSSSS 360 NGLNTVTDTN EWFS

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence

MSFFGDLRHT LAKTKPPLTT ISAASMIGDD PRAPLLNLSA VQARMDTLQK FLSDSVNSNT  60
LLGQHQMNMV SDEITSAIHQ IIVNGAALLS STQSTNHPPQ LPELKINPKS NHKRTFSEFD  120
RRGSEVKVLE EEDGDDLEII ELDAVELLAE HIHFCDFCGK GFKRDANLRM HMRAHGNQYK  180
TPEALAKPDK CIESGSKNRR FSCPFVGCCR NKSHSKFRPL KSAICVKNHF KRSHCPKMYS  240
CTRCNKKSFS VLADLKSHLK HCGETKWKCS CGTSFSRKDK LFGHMALFEG HMPAIEPEEE  300
AKPPAAVEDD VEMDVSRGSD NGFLDIRTGS DNGFMDRLML DGFESIDSYC FQDLLGSSSS  360
NGLNTVTDTN EWFS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	2e-72	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT26869