PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT26918

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 253aa MW: 29198.7 Da PI: 8.7986

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT26918	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	65.1	1.3e-20	18	65	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ll ++v+++G g+W++++r+ g++Rt+k+c++rw +yl OIT26918 18 KGPWTPEEDKLLSEYVNLHGEGRWSSVSRCAGLNRTGKSCRLRWVNYL 65 79********************************************97 PP
2	Myb_DNA-binding	51.4	2.6e-16	71	115	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T++E+ +++++++++G++ W+tIar+++ gRt++++k++w+++ OIT26918 71 RGHITPQEEGIIIELHALWGNK-WSTIARYLP-GRTDNEIKNYWRTH 115 6778****************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence
MVGMMGWGAN SDQQGWRKGP WTPEEDKLLS EYVNLHGEGR WSSVSRCAGL NRTGKSCRLR 60 WVNYLRPGLK RGHITPQEEG IIIELHALWG NKWSTIARYL PGRTDNEIKN YWRTHFKKKQ 120 KASAKQDKRK IQRQRNQQQQ NCTIANKLSP KAEEAIMQKS DEQYDNEYQD AVTFTNYHQN 180 MDPVVDLPPV VTTSSDISYA WTDTIPMDGL WGGLWNLDVD DKCKVAIQNQ PNTANYSYTT 240 DYALNLYNGG FIF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G30210.1	2e-67	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT26918