PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT26936

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 255aa MW: 29724.9 Da PI: 9.8185

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT26936	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.3	4.2e-14	19	66	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+ eEd++l+d++ ++G +W+ +r g+ Rt+k+c+ rw +yl OIT26936 19 KGAWSWEEDQKLKDYIMRYGIWNWSNMPRFAGLSRTGKSCRIRWMNYL 66 79****************99**********************97 PP
2	Myb_DNA-binding	44.8	2.9e-14	72	117	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+++ eE e ++ +qlG++ W++Ia++++ gRt+k++k++++++l OIT26936 72 KGPFSIEERETVIKMYQQLGTR-WSAIAAKLP-GRTDKDVKNFFYTHL 117 799*****************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence
MSSVPQQQQK STNMEEIKKG AWSWEEDQKL KDYIMRYGIW NWSNMPRFAG LSRTGKSCRI 60 RWMNYLHPEV KKGPFSIEER ETVIKMYQQL GTRWSAIAAK LPGRTDKDVK NFFYTHLKKH 120 LGMKNDALLK FKARRKRVEK TKKSEKKINP EFEKAQERPI LLLAINNLTI GTSSNNSLIS 180 PDVSSSNSSI ITFEENQKMN NVDDQPIIDM ENTVILESNP ETHLSDHSLS IESMDQFDTS 240 SFWFHLLNDA HRLIL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21440.1	7e-44	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT26936