PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT26953
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 245aa    MW: 27489.9 Da    PI: 10.7453
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT26953genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.32e-1485129347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky
         OIT26953  85 PWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 129
                      8*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    
MSNQYGNKEH EFQEISAGKG KGFMLFGVRV MEAGTSFRKS ASMNNLALFD KQHQDSNVDD  60
VAAGYVSDDV VHPSARSRER KRGVPWTEEE HKLFLLGLQK VGKGDWRGIS RNFVKTRTPT  120
QVASHAQKYF LRRNNNNRRR RRSSLFDITT HMVQSVVKLE DKQMNQNTIE SSANNLTIGL  180
NKSVKPIRPI PFLPPSSKMA NLNLNKTYVQ ESDEKSPPAR HSSAFQSMSS GFNGNTSGDS  240
IISVA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70000.22e-62MYB_related family protein