PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT27177

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C3H

Protein Properties

Length: 878aa MW: 98322.8 Da PI: 8.98

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT27177	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.2	4.4e-06	176	196	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 Cr+f + G C++G+ C+F H+ OIT27177 176 VCRNFTA-GNCRRGSDCRFFHP 196 6****.*********998 PP
2	zf-CCCH	19.4	1.9e-06	258	281	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +t +Cr+f + G C+ G++C+F+H+ OIT27177 258 GTIICRDFVK-GNCRWGASCRFSHD 281 5779****.***********5 PP

Sequence ? help Back to Top
Protein Sequence Length: 878 aa Download sequence
MGESAKRRKS LWDAEETPNS PDYEEWGASK ADNSWQSKNN SGWSCGDNVT GTEELRKENY 60 HYKSMSPAFD RWGRRSNSHS PNNGRTQSRR YPGRARSRSR SRSRSRARGE GRSRSRSRGR 120 DRFRGWTRSR SRSKSRDRDR GSMRVQNRSR SPLHNSKRDP YASGDRRSGP RMSSQVCRNF 180 TAGNCRRGSD CRFFHPDAIN HRDGGHSEGN LTERLGSRPE RGHVSRYADS EGPGYQSRDR 240 LPDTHHLEDE MHRNRNRGTI ICRDFVKGNC RWGASCRFSH DGASGDIYDK GTRSASFDHG 300 QDNHASRTGK SVCKYFAAGK CYKDNCKFSH DATSRNHEIR PSDDIGGHRL DDKNNWLKGP 360 KWDDEGRPSD LVKASGWDEG RPSDHVKASG WDEGRPSDHV KSSGWDESVV RKDTAVTVLT 420 DRTNERLDHS FENESRAWGS TEPHYMNSDG ERGVSPHGGN AGNLNALNIS ESSVIQKLTN 480 AQAIHLTSQA SDQNMERTSA HVLGHNSNPE ASGIILSATA TQPYGSASSY IQPQGLIEDS 540 IARTLGSNAL NEFMHAREGL HQVHLPGQSF SGTGIGMSSE HSAVLNGTHQ EPNVFLPIPS 600 TGHNKREAPS TPEMLEFKVP QNISCTVTGE QVHQTKTSPT SMIKKFEEEL REAQLQRVLN 660 PSDPSGMLAS HPISSLVNAI YGQTNPEMRG PNNYHPADGV DNFKMPPDNS SYLDRDSNKV 720 PEEQMNQLST VDPEPGNNDQ IDDVKQQENK FVEVNGKDKL APVESKDGQE NDHPGDMNMH 780 GKVEEGSGNK DEKAMRLFKN ALIEFVKEIL KPTWKEGKMS REVHKTVVKK VVDKVTSTTQ 840 GEHVPKTQEK IEQYLSYSKA KITKLVQAYV ERLLKNEA

Sequence ? help Back to Top

Protein Sequence Length: 878 aa Download sequence

MGESAKRRKS LWDAEETPNS PDYEEWGASK ADNSWQSKNN SGWSCGDNVT GTEELRKENY  60
HYKSMSPAFD RWGRRSNSHS PNNGRTQSRR YPGRARSRSR SRSRSRARGE GRSRSRSRGR  120
DRFRGWTRSR SRSKSRDRDR GSMRVQNRSR SPLHNSKRDP YASGDRRSGP RMSSQVCRNF  180
TAGNCRRGSD CRFFHPDAIN HRDGGHSEGN LTERLGSRPE RGHVSRYADS EGPGYQSRDR  240
LPDTHHLEDE MHRNRNRGTI ICRDFVKGNC RWGASCRFSH DGASGDIYDK GTRSASFDHG  300
QDNHASRTGK SVCKYFAAGK CYKDNCKFSH DATSRNHEIR PSDDIGGHRL DDKNNWLKGP  360
KWDDEGRPSD LVKASGWDEG RPSDHVKASG WDEGRPSDHV KSSGWDESVV RKDTAVTVLT  420
DRTNERLDHS FENESRAWGS TEPHYMNSDG ERGVSPHGGN AGNLNALNIS ESSVIQKLTN  480
AQAIHLTSQA SDQNMERTSA HVLGHNSNPE ASGIILSATA TQPYGSASSY IQPQGLIEDS  540
IARTLGSNAL NEFMHAREGL HQVHLPGQSF SGTGIGMSSE HSAVLNGTHQ EPNVFLPIPS  600
TGHNKREAPS TPEMLEFKVP QNISCTVTGE QVHQTKTSPT SMIKKFEEEL REAQLQRVLN  660
PSDPSGMLAS HPISSLVNAI YGQTNPEMRG PNNYHPADGV DNFKMPPDNS SYLDRDSNKV  720
PEEQMNQLST VDPEPGNNDQ IDDVKQQENK FVEVNGKDKL APVESKDGQE NDHPGDMNMH  780
GKVEEGSGNK DEKAMRLFKN ALIEFVKEIL KPTWKEGKMS REVHKTVVKK VVDKVTSTTQ  840
GEHVPKTQEK IEQYLSYSKA KITKLVQAYV ERLLKNEA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	94	102	RARSRSRSR
2	94	104	RARSRSRSRSR
3	96	104	RARSRSRSR
4	96	106	RARSRSRSRSR
5	98	106	RARSRSRSR
6	98	108	RARSRSRSRSR
7	100	108	RARSRSRSR
8	112	120	RARSRSRSR
9	112	122	RARSRSRSRSR
10	114	124	RARSRSRSRSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	1e-12	C3H family protein

Link Out ? help Back to Top
Ensembl	OIT27177