PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT27282

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 260aa MW: 30723.7 Da PI: 9.706

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT27282	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.4	3.8e-19	24	71	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll+++vk++G g+W+++ar g++R +k+c++rw +yl OIT27282 24 KGPWTAEEDRLLIEYVKLHGEGRWNSVARLTGLKRNGKSCRLRWVNYL 71 79****************************9***********97 PP
2	Myb_DNA-binding	51.9	1.8e-16	77	121	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++ OIT27282 77 RGQITPHEERIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 121 7888****************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence
MLSEIIMSSE KMGNWGIIEE GWRKGPWTAE EDRLLIEYVK LHGEGRWNSV ARLTGLKRNG 60 KSCRLRWVNY LRPDLKRGQI TPHEERIILE LHARWGNRWS TIARSLPGRT DNEIKNYWRT 120 HFKKKTKNSC ANSEKSRARL WKRQQFQQQQ QHQLQQQQQQ INNQIDIKRV MSFFDHNENK 180 VPTMPQAKQE TTVLYPNTVD QQNQVGFFYS MLNGCSSVSV PEPSSDEDIM WDGLWNLDDF 240 YGQFINTTTY NKTITTPNCL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24310.1	2e-79	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT27282