PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT27370
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 640aa    MW: 70150 Da    PI: 7.0605
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT27370genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS348.51.1e-1062736403374
      GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIl 103
               + ++e+A+a+s+g ++ a ++L+rl + ++ +g+++qRl+ay++ AL++r++     +    p+ e    +s+e++ +++ ++evsP++k+++++aN aIl
  OIT27370 273 QSITEAATAISEGINHVAVEILTRLAQVSNVRGSSIQRLTAYMVSALRSRVNP----TDYPPPVLEL---HSKEHTVSTQNLYEVSPCFKLGFMAANLAIL 366
               67899***********************************************9....2222333333...599999999********************** PP

      GRAS 104 eavege..ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEa 201
               eav  +  +++H+iDfd++qG+Q++ Ll+aLa+++ e+p  l+iT++ ++  g  ++l+++g  L+ +A+++gv + fnv +a +++dl+ e+L ++p+Ea
  OIT27370 367 EAVTDHptNKIHVIDFDVGQGGQYLHLLHALAAKKsEKPGVLKITAFTEQVGGVDDRLNSIGVELKAVANKIGVCLYFNV-MACKITDLSREKLGIEPDEA 466
               *****9999***********************77736666*********8888**************************9.7999**************** PP

      GRAS 202 laVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvaceg 302
               laVn++++l+rl+desv++e+ rde+L+ vk+lsPkv++vveqe++ n+++Fl+r+ ea+ yy alfdsl+a+++r++ er+ +E+  l+r+  n vaceg
  OIT27370 467 LAVNFAFKLYRLPDESVTTENLRDELLRRVKGLSPKVITVVEQELNGNTAPFLARVNEACGYYGALFDSLDATVSRDNLERVRIEEG-LSRKMANSVACEG 566
               ***************************************************************************************.************* PP

      GRAS 303 aerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374
               ++r+er+e ++kWr+r+++aGF + p+s+ +a++  + l+     + g++v+e+sg +++gW++r+L+++SaWr
  OIT27370 567 RDRVERCEVFGKWRARMSMAGFVQRPMSQLVANSLCSKLNSGTrgNPGFTVNEQSGGICFGWMGRTLTVASAWR 640
               *****************************9999887777654437999*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 640 aa     Download sequence    
MSSGFTGDFY GAGGINTGRS TMNNNTLRSQ LSGILPDPAT QIVLGRPNLM GKRSLAEFQQ  60
QQQFQFLQQQ NQQQQMILLQ QQQQQGLGFY LRNVKPRNYQ QASPIDFSVA AAAASSISSE  120
FSSFSSNSNA STMNTRHTLP VLQQLRSQPA LPLANTNISG FSHPGTHNYS TGVHNRATIG  180
QELLSQESEK KMMNQLQELE KQLLDDNDDE DGDTVSVVTN NEWSETIQNL ISPCQSQNQN  240
QNQNQKLASL SPSSSTSSCA SSTESPPISC PKQSITEAAT AISEGINHVA VEILTRLAQV  300
SNVRGSSIQR LTAYMVSALR SRVNPTDYPP PVLELHSKEH TVSTQNLYEV SPCFKLGFMA  360
ANLAILEAVT DHPTNKIHVI DFDVGQGGQY LHLLHALAAK KSEKPGVLKI TAFTEQVGGV  420
DDRLNSIGVE LKAVANKIGV CLYFNVMACK ITDLSREKLG IEPDEALAVN FAFKLYRLPD  480
ESVTTENLRD ELLRRVKGLS PKVITVVEQE LNGNTAPFLA RVNEACGYYG ALFDSLDATV  540
SRDNLERVRI EEGLSRKMAN SVACEGRDRV ERCEVFGKWR ARMSMAGFVQ RPMSQLVANS  600
LCSKLNSGTR GNPGFTVNEQ SGGICFGWMG RTLTVASAWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-140GRAS family protein